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Search term: YLR105C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SEN2
SGD link S000004095
Alternative ID YLR105C
Description Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease
Synonyms YLR105C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4685 AC-HY-E

KOGs classification KOGs description
J
INFORMATION STORAGE AND PROCESSING
Translation, ribosomal structure and biogenesis
tRNA splicing endonuclease SEN2

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g45590 GI:15231186 Q9M1E8
Arabidopsis thaliana (Ath) At5g60230 GI:15238643 Q9LSS3
Caenorhabditis elegans (Cel) CE28857 GI:17556274
Homo sapiens (Hsa) Hs13376882
(TSEN2)
GI:13376882 Q8NCE0
Saccharomyces cerevisiae (Sce) YLR105c
(S000004095)
GI:6323134 P16658
Encephalitozoon cuniculi (Ecu) ECU03g0920 GI:19173050 Q8SS95


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0005637 nuclear inner membrane C
TAS
SceS000004095
GO:0005741 mitochondrial outer membrane C
IDA
SceS000004095
IMP
SceS000004095
IPI
SceS000004095
GO:0000213 tRNA-intron endonuclease activity F
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0004518 nuclease activity F
ISS
AthAt5g60230
GO:0006388 tRNA splicing P
ISS
AthAt5g60230
RCA
AthAt3g45590
TAS
SceS000004095

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000004095

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000004095
(YLR105C)
Anopheles gambiae (Aga) 1967 1 ENSANGP00000010953
Canis familiaris (Cfa) 1552 1 ENSCAFP00000007420
Takifugu rubripes (Fru) 1896 1 SINFRUP00000127085
Gallus gallus (Gga) 1288 1 ENSGALP00000007969
(RCJMB04_24m3)
Q5ZIN2
Drosophila melanogaster (Dme) 1872 1 CG31812-PA
(FBgn0051812)
Schizosaccharomyces pombe (Spo) 1942 1 SPAPB17E12.07c Q8TFH7
Arabidopsis thaliana (Ath) 1887 1 NP_190145
(At3g45590.1)
Q9M1E8
Arabidopsis thaliana (Ath) 1887 0.713 NP_200831
(At5g60230.1)
Q9LSS3


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
ISS
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0005637 nuclear inner membrane C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005737 cytoplasm C
IDA
SpoSPAPB17E12.07c
GO:0005741 mitochondrial outer membrane C
IDA
SceS000004095
IMP
SceS000004095
IPI
SceS000004095
ISS
SpoSPAPB17E12.07c
GO:0000213 tRNA-intron endonuclease activity F
ISS
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0004518 nuclease activity F
ISS
AthAt5g60230
GO:0006388 tRNA splicing P
ISS
AthAt5g60230
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
TAS
SceS000004095

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39688

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAPB17E12.07c GI:67993595 Q8TFH7
Saccharomyces cerevisiae (Sce) SEN2
(S000004095)
GI:6323134 P16658
Kluyveromyces lactis (Kla) KLLA0F19866g GI:50311881 Q6CJB7
Eremothecium gossypii (Ego) AGR073C GI:45201168
Magnaporthe grisea (Mgr) MG10667.4 GI:39970117
Neurospora crassa (Ncr) GeneID:2708643 GI:32412256


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005637 nuclear inner membrane C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005737 cytoplasm C
IDA
SpoSPAPB17E12.07c
GO:0005741 mitochondrial outer membrane C
IDA
SceS000004095
IMP
SceS000004095
IPI
SceS000004095
ISS
SpoSPAPB17E12.07c
GO:0000213 tRNA-intron endonuclease activity F
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0006388 tRNA splicing P
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_1562

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga11638 ENSANGP00000010953
Ashbya gossypii (Ago) ago4383 AGR073C
Arabidopsis thaliana (Ath) ath15836 At3g45590.1
Arabidopsis thaliana (Ath) ath28100 At5g60230.1
Arabidopsis thaliana (Ath) ath28101 At5g60230.2
Caenorhabditis elegans (Cel) cel19932 Y56A3A.11
(CE31839;
WBGene00013231)
Candida glabrata (Cgl) cgl5159 CAGL0M11594g
Cryptococcus neoformans (Cne) cne5645 179.m00507
Dictyostelium discoideum (Ddi) ddi4758 DDB0204993
Debaryomyces hansenii (Dha) dha3987 DEHA0E16863g
Drosophila melanogaster (Dme) dme2662 CG31812-PA
(FBgn0051812)
Takifugu rubripes (Fru) fru18790 SINFRUP00000127085
Gallus gallus (Gga) gga5106 ENSGALP00000007969
(RCJMB04_24m3)
Q5ZIN2
Gallus gallus (Gga) gga5107 ENSGALP00000007970
Gallus gallus (Gga) gga5108 ENSGALP00000007971
Homo sapiens (Hsa) hsa22100 ENSP00000284995
(TSEN2)
Q8NCE0-1
Homo sapiens (Hsa) hsa22099 ENSP00000323188
(TSEN2)
Q8NCE0-3
Kluyveromyces lactis (Kla) kla4972 KLLA0F19866g
Mus musculus (Mmu) mmu22528 ENSMUSP00000038211
(MGI:2141599)
Q6P7W5
Neurospora crassa (Ncr) ncr1079 NCU01115.2
Oryza sativa (Osa) osa23723 3735.m00155
Oryza sativa (Osa) osa23775 3736.m00197
Oryza sativa (Osa) osa23847 3780.m00141
Oryza sativa (Osa) osa40767 5097.m00062
Oryza sativa (Osa) osa40771 5097.m00064
Oryza sativa (Osa) osa73903 7282.m00179
Plasmodium falciparum (Pfa) pfa1196 PF14_0514
Rattus norvegicus (Rno) rno22020 ENSRNOP00000036310
(RGD:1309946)
Saccharomyces cerevisiae (Sce) sce4187 YLR105C
(S000004095)
Schizosaccharomyces pombe (Spo) spo176 SPAPB17E12.07c Q8TFH7
Yarrowia lipolytica (Yli) yli1036 YALI0B07293g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
ISS
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0005637 nuclear inner membrane C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005737 cytoplasm C
IDA
SpoSPAPB17E12.07c
GO:0005741 mitochondrial outer membrane C
IDA
SceS000004095
IMP
SceS000004095
IPI
SceS000004095
ISS
SpoSPAPB17E12.07c
GO:0000213 tRNA-intron endonuclease activity F
ISS
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
At5g60230
TAS
SceS000004095
GO:0004518 nuclease activity F
ISS
AthAt5g60230
GO:0006388 tRNA splicing P
ISS
AthAt5g60230
DmeFBgn0051812
SpoSPAPB17E12.07c
RCA
AthAt3g45590
TAS
SceS000004095

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAPB17E12.07c
(Q8TFH7)
YLR105C
(S000004095)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000214 tRNA-intron endonuclease complex C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005637 nuclear inner membrane C
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0005737 cytoplasm C
IDA
SpoSPAPB17E12.07c
GO:0005741 mitochondrial outer membrane C
IDA
SceS000004095
IMP
SceS000004095
IPI
SceS000004095
ISS
SpoSPAPB17E12.07c
GO:0000213 tRNA-intron endonuclease activity F
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095
GO:0006388 tRNA splicing P
ISS
SpoSPAPB17E12.07c
TAS
SceS000004095

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Query species:

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Search for GO info:  

GO info in one table:

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