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Search term: YJR104C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SOD1
SGD link S000003865
Alternative ID YJR104C
Description Cytosolic superoxide dismutase; some mutations are analogous to those that cause ALS (amyotrophic lateral sclerosis) in humans
Synonyms YJR104C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0441 ACDHYP-

KOGs classification KOGs description
P
METABOLISM
Inorganic ion transport and metabolism
Cu2+/Zn2+ superoxide dismutase SOD1

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g08830 GI:15223944 P24704
Arabidopsis thaliana (Ath) At2g28190 GI:15226353
Arabidopsis thaliana (Ath) At5g18100 GI:15238738 Q9FK60
Caenorhabditis elegans (Cel) CE05080
(WBGene00007036)
GI:17537871 Q27538
Caenorhabditis elegans (Cel) CE18162_2 GI:17563700 Q7JL02
Caenorhabditis elegans (Cel) CE18163_2 GI:17563702 Q7JL02
Caenorhabditis elegans (Cel) CE23550
(WBGene00004930)
GI:17535733
Caenorhabditis elegans (Cel) CE25009
(WBGene00004933)
GI:17554806 P34461
Drosophila melanogaster (Dme) 7294760
(FBgn0003462)
GI:17136496 P61851
Drosophila melanogaster (Dme) 7301400 GI:7301400 Q9VBK8
Drosophila melanogaster (Dme) 7303595 GI:7303595
Homo sapiens (Hsa) Hs18570519 GI:18570519
Homo sapiens (Hsa) Hs22067924 GI:22067924
Homo sapiens (Hsa) Hs4507149
(SOD1)
GI:4507149 P00441
Homo sapiens (Hsa) Hs4507151
(SOD3)
GI:4507151 P08294
Saccharomyces cerevisiae (Sce) YJR104c
(S000003865)
GI:6322564 P00445
Schizosaccharomyces pombe (Spo) SPAC22E12.04 GI:19115742 Q10357
Schizosaccharomyces pombe (Spo) SPAC821.10c GI:19114075 P28758


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005578 extracellular matrix (sensu Metazoa) C
NR
HsaP08294
GO:0005625 soluble fraction C
TAS
HsaP08294
GO:0005634 nucleus C
IDA
SpoSPAC22E12.04
SPAC821.10c
GO:0005737 cytoplasm C
NAS
DmeFBgn0003462
NR
HsaP00441
GO:0005743 mitochondrial inner membrane C
ISS
SpoSPAC22E12.04
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000003865
ISS
SpoSPAC821.10c
GO:0005829 cytosol C
IDA
SceS000003865
SpoSPAC22E12.04
SPAC821.10c
ISS
SpoSPAC22E12.04
SPAC821.10c
TAS
AthAt1g08830
GO:0009507 chloroplast C
IDA
AthAt2g28190
GO:0004785 copper, zinc superoxide dismutase
activity
F
IDA
AthAt2g28190
SceS000003865
IMP
SpoSPAC821.10c
NAS
DmeFBgn0003462
TAS
AthAt1g08830
HsaP00441
GO:0016209 antioxidant activity F
NAS
DmeFBgn0003462
GO:0016531 copper chaperone activity F
IDA
SpoSPAC22E12.04
GO:0016532 superoxide dismutase copper chaperone
activity
F
IGI
SpoSPAC22E12.04
GO:0001320 age-dependent response to reactive oxygen species
during chronological cell aging
P
TAS
SceS000003865
GO:0006801 superoxide metabolism P
IMP
SceS000003865
ISS
SpoSPAC821.10c
NAS
DmeFBgn0003462
GO:0006878 copper ion homeostasis P
IGI
SceS000003865
SpoSPAC22E12.04
ISS
SpoSPAC821.10c
GO:0006882 zinc ion homeostasis P
IGI
SceS000003865
IMP
SceS000003865
ISS
SpoSPAC821.10c
GO:0006950 response to stress P
IMP
AthAt2g28190
GO:0006979 response to oxidative stress P
IDA
AthAt2g28190
IMP
SpoSPAC821.10c
NR
HsaP00441
TAS
AthAt1g08830
GO:0007399 nervous system development P
TAS
HsaP00441
GO:0007568 aging P
TAS
DmeFBgn0003462
GO:0008340 determination of adult life span P
IMP
DmeFBgn0003462
TAS
DmeFBgn0003462
GO:0009416 response to light stimulus P
IEP
AthAt2g28190
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00011328
GO:0010038 response to metal ion P
IGI
SpoSPAC22E12.04
GO:0010039 response to iron ion P
IEP
AthAt2g28190
At1g08830
GO:0019430 removal of superoxide radicals P
IC
AthAt2g28190
NAS
DmeFBgn0003462
GO:0046688 response to copper ion P
IEP
AthAt2g28190
At1g08830

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000003865

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000003865
(YJR104C)
Anopheles gambiae (Aga) 991 1 ENSANGP00000015824
Canis familiaris (Cfa) 1204 1 ENSCAFP00000013012
Danio rerio (Dre) 828 1 ENSDARP00000047135
Danio rerio (Dre) 828 1 ENSDARP00000049253
Takifugu rubripes (Fru) 1007 1 SINFRUP00000140559
Gallus gallus (Gga) 1006 1 ENSGALP00000025499
(SOD1)
P80566
Homo sapiens (Hsa) 1156 1 ENSP00000270142
(SOD1)
Mus musculus (EMM) 1086 1 ENSMUSP00000023707
(MGI:98351)
P08228
Mus musculus (EMM) 1086 0.957 ENSMUSP00000057271
(GI:545845)
Pan troglodytes (Ptr) 1396 1 ENSPTRP00000006775
Rattus norvegicus (ERN) 1035 1 ENSRNOP00000002885
(RGD:3731)
P07632
Caenorhabditis elegans (Cel) 875 1 WBGene00004930
(CE23550)
Caenorhabditis elegans (Cel) 875 0.435 WBGene00007036
(CE05080)
Dictyostelium discoideum (Ddi) 1013 1 DDB0191290
Dictyostelium discoideum (Ddi) 1013 0.094 DDB0188850
Drosophila melanogaster (Dme) 1062 1 CG11793-PA
(FBgn0003462)
Mus musculus (Mmu) 1063 1 MGI:98351 P08228
Oryza sativa (Osa) 868 1 P93407 P93407
Oryza sativa (Osa) 868 1 Q6YYW6 Q6YYW6
Oryza sativa (Osa) 868 1 Q76MX3 Q76MX3
Oryza sativa (Osa) 868 0.153 P28756 P28756
Oryza sativa (Osa) 868 0.135 P28757 P28757
Rattus norvegicus (Rno) 914 1 RGD:3731 34442
Schizosaccharomyces pombe (Spo) 1564 1 SPAC821.10c P28758
Arabidopsis thaliana (Ath) 1000 1 NP_565666
(At2g28190.1)
O78310
Arabidopsis thaliana (Ath) 1000 0.131 NP_172360
(At1g08830.1)
P24704
Arabidopsis thaliana (Ath) 1000 0.066 NP_197311
(At5g18100.1)
Q9FK60


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
RnoRGD:3731
SpoSPAC821.10c
GO:0005737 cytoplasm C
IDA
RnoRGD:3731
ISS
RnoRGD:3731
NAS
DmeFBgn0003462
TAS
MmuMGI:98351
GO:0005739 mitochondrion C
IDA
MmuMGI:98351
RnoRGD:3731
ISS
RnoRGD:3731
GO:0005758 mitochondrial intermembrane space C
IDA
SceS000003865
ISS
SpoSPAC821.10c
GO:0005829 cytosol C
IDA
SceS000003865
SpoSPAC821.10c
ISS
SpoSPAC821.10c
TAS
AthAt1g08830
GO:0009507 chloroplast C
IDA
AthAt2g28190
GO:0004784 superoxide dismutase activity F
IDA
MmuMGI:98351
IMP
DdiDDB0191290
ISS
RnoRGD:3731
GO:0004785 copper, zinc superoxide dismutase
activity
F
IDA
AthAt2g28190
MmuMGI:98351
RnoRGD:3731
SceS000003865
IMP
SpoSPAC821.10c
ISS
RnoRGD:3731
NAS
DmeFBgn0003462
TAS
AthAt1g08830
MmuMGI:98351
GO:0005507 copper ion binding F
TAS
RnoRGD:3731
GO:0005515 protein binding F
TAS
RnoRGD:3731
GO:0016209 antioxidant activity F
NAS
DmeFBgn0003462
GO:0000187 activation of MAPK activity P
IDA
MmuMGI:98351
ISS
RnoRGD:3731
GO:0001320 age-dependent response to reactive oxygen species
during chronological cell aging
P
TAS
SceS000003865
GO:0006309 DNA fragmentation during apoptosis P
IDA
MmuMGI:98351
ISS
RnoRGD:3731
GO:0006801 superoxide metabolism P
IMP
DdiDDB0191290
SceS000003865
ISS
SpoSPAC821.10c
NAS
DmeFBgn0003462
TAS
RnoRGD:3731
GO:0006878 copper ion homeostasis P
IGI
SceS000003865
ISS
SpoSPAC821.10c
GO:0006882 zinc ion homeostasis P
IGI
SceS000003865
IMP
SceS000003865
ISS
SpoSPAC821.10c
GO:0006916 anti-apoptosis P
IMP
RnoRGD:3731
GO:0006950 response to stress P
IMP
AthAt2g28190
GO:0006979 response to oxidative stress P
IDA
AthAt2g28190
MmuMGI:98351
IMP
SpoSPAC821.10c
ISS
RnoRGD:3731
TAS
AthAt1g08830
RnoRGD:3731
GO:0007399 nervous system development P
ISS
RnoRGD:3731
GO:0007568 aging P
TAS
DmeFBgn0003462
GO:0008340 determination of adult life span P
IMP
DmeFBgn0003462
TAS
DmeFBgn0003462
GO:0009416 response to light stimulus P
IEP
AthAt2g28190
GO:0010039 response to iron ion P
IEP
AthAt2g28190
At1g08830
GO:0019430 removal of superoxide radicals P
IC
AthAt2g28190
ISS
RnoRGD:3731
NAS
DmeFBgn0003462
TAS
MmuMGI:98351
RnoRGD:3731
GO:0031152 aggregation during fruiting body
development
P
IMP
DdiDDB0191290
GO:0031667 response to nutrient levels P
IDA
RnoRGD:3731
GO:0042554 superoxide release P
IDA
MmuMGI:98351
ISS
RnoRGD:3731
GO:0046688 response to copper ion P
IEP
AthAt2g28190
At1g08830
IMP
RnoRGD:3731
GO:0050665 hydrogen peroxide biosynthesis P
IMP
RnoRGD:3731

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
392

Species Gene ID NCBI link UniProt link
Homo sapiens (Hsa) SOD1 GI:4507149 P00441
Pan troglodytes (Ptr) SOD1 GI:57113939 P60052
Canis familiaris (Cfa) SOD1 GI:50978674 Q8WNN6
Mus musculus (Mmu) Sod1
(MGI:98351)
GI:45597447 P08228
Mus musculus (Mmu) EG667310 GI:94377409
Rattus norvegicus (Rno) Sod1
(RGD:3731)
GI:8394328 34442
Gallus gallus (Gga) LOC395938 GI:45384218
Drosophila melanogaster (Dme) Sod
(FBgn0003462)
GI:17136496 P61851
Anopheles gambiae (Aga) ENSANGG00000013675 GI:58381998 Q7QDP9
Caenorhabditis elegans (Cel) sod-1
(CE23550;
WBGene00004930)
GI:71981876 P34697
Schizosaccharomyces pombe (Spo) sod1
(SPAC821.10c)
GI:19114075 P28758
Saccharomyces cerevisiae (Sce) SOD1
(S000003865)
GI:6322564 P00445
Kluyveromyces lactis (Kla) KLLA0E05522g GI:50308391 Q6CPE2
Eremothecium gossypii (Ego) AGL321W GI:45200776
Magnaporthe grisea (Mgr) MG02625.4 GI:39970317 Q2KGI6
Neurospora crassa (Ncr) GeneID:2711251 GI:32417690
Arabidopsis thaliana (Ath) CSD1 GI:15223944 P24704
Oryza sativa (Osa) OJ1343_D04.132 GI:34899232