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Search term: YJL140W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RPB4
SGD link S000003676
Alternative ID YJL140W
Description RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; dispensable under some environmental conditions; involved in export of mRNA to cytoplasm under stress conditions; involved in telomere maintenance
Synonyms YJL140W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2351 AC-HYPE

KOGs classification KOGs description
K
INFORMATION STORAGE AND PROCESSING
Transcription
RNA polymerase II, fourth largest subunit

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At5g09920 GI:15242547 O48890
Caenorhabditis elegans (Cel) CE28327_2 GI:17533967 O02092
Homo sapiens (Hsa) Hs4758574
(POLR2D)
GI:4758574 O15514
Saccharomyces cerevisiae (Sce) YJL140w
(S000003676)
GI:6322321 P20433
Schizosaccharomyces pombe (Spo) SPBC337.14 GI:19112207 O74825
Encephalitozoon cuniculi (Ecu) ECU08g0765 GI:19173403 Q8SRC5


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IC
HsaO15514
TAS
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0005739 mitochondrion C
IDA
SpoSPBC337.14
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
TAS
SpoSPBC337.14
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPBC337.14
TAS
HsaO15514
SceS000003676
GO:0005515 protein binding F
IGI
SpoSPBC337.14
GO:0000288 mRNA catabolism, deadenylation-dependent
decay
P
IMP
SceS000003676
GO:0000723 telomere maintenance P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter
P
TAS
HsaO15514
SceS000003676
SpoSPBC337.14
GO:0006406 mRNA export from nucleus P
IMP
SceS000003676
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00018391

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000003676

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000003676
(YJL140W)
Anopheles gambiae (Aga) 1800 1 ENSANGP00000009867
Canis familiaris (Cfa) 1919 1 ENSCAFP00000006403
Danio rerio (Dre) 1684 1 ENSDARP00000008420
(polr2d)
Q6DRG4
Takifugu rubripes (Fru) 1841 1 SINFRUP00000171593
Takifugu rubripes (Fru) 1841 0.449 SINFRUP00000133364
Gallus gallus (Gga) 1711 1 ENSGALP00000003195
(POLR2D)
Homo sapiens (Hsa) 1949 1 ENSP00000272645
(POLR2D)
O15514
Mus musculus (EMM) 1920 1 ENSMUSP00000025106
(MGI:1916491)
Q9D7M8
Pan troglodytes (Ptr) 1774 1 ENSPTRP00000021299
Rattus norvegicus (ERN) 1874 1 ENSRNOP00000021738
(RGD:1308565)
Drosophila melanogaster (Dme) 1827 1 CG31237-PA
Mus musculus (Mmu) 1879 1 MGI:1916491 Q9D7M8
Oryza sativa (Osa) 1746 1 Q6ZGM1 Q6ZGM1
Oryza sativa (Osa) 1746 0.092 Q6Z5M2 Q6Z5M2
Schizosaccharomyces pombe (Spo) 2364 1 SPBC337.14 O74825
Arabidopsis thaliana (Ath) 2035 1 NP_196554
(At5g09920.1)
O48890


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IC
HsaO15514
ISS
RnoRGD:1308565
TAS
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0005739 mitochondrion C
IDA
SpoSPBC337.14
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
TAS
SpoSPBC337.14
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPBC337.14
ISS
RnoRGD:1308565
TAS
HsaO15514
SceS000003676
GO:0005515 protein binding F
IGI
SpoSPBC337.14
GO:0000288 mRNA catabolism, deadenylation-dependent
decay
P
IMP
SceS000003676
GO:0000723 telomere maintenance P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter
P
ISS
RnoRGD:1308565
TAS
HsaO15514
SceS000003676
SpoSPBC337.14
GO:0006406 mRNA export from nucleus P
IMP
SceS000003676

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39391

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RPB4
(S000003676)
GI:6322321 P20433
Kluyveromyces lactis (Kla) KLLA0A05797g GI:50302645 Q6CXT1
Eremothecium gossypii (Ego) ACR250W GI:45185936


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
TAS
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0003899 DNA-directed RNA polymerase activity F
TAS
SceS000003676
GO:0000288 mRNA catabolism, deadenylation-dependent
decay
P
IMP
SceS000003676
GO:0000723 telomere maintenance P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter
P
TAS
SceS000003676
GO:0006406 mRNA export from nucleus P
IMP
SceS000003676

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_2781

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3303 ENSANGP00000009867
Ashbya gossypii (Ago) ago1297 ACR250W
Arabidopsis thaliana (Ath) ath23189 At5g09920.1
Caenorhabditis elegans (Cel) cel9011 F43E2.2
(CE28327;
WBGene00018391)
Candida glabrata (Cgl) cgl2711 CAGL0I04400g
Cryptococcus neoformans (Cne) cne477 163.m06371
Dictyostelium discoideum (Ddi) ddi12747 DDB0216294
Debaryomyces hansenii (Dha) dha4783 DEHA0F09031g
Drosophila melanogaster (Dme) dme13196 CG31237-PA
Danio rerio (Dre) dre24290 ENSDARP00000008420
(polr2d)
Q6DRG4
Encephalitozoon cuniculi (Ecu) ecu234 19173403
Takifugu rubripes (Fru) fru14595 SINFRUP00000133364
Takifugu rubripes (Fru) fru2468 SINFRUP00000171593
Gallus gallus (Gga) gga23091 ENSGALP00000003195
(POLR2D)
Homo sapiens (Hsa) hsa18570 ENSP00000272645
(POLR2D)
O15514
Kluyveromyces lactis (Kla) kla255 KLLA0A05797g
Mus musculus (Mmu) mmu12447 ENSMUSP00000025106
(MGI:1916491)
Q9D7M8
Neurospora crassa (Ncr) ncr9137 NCU09378.2
Oryza sativa (Osa) osa22306 3702.m00148
Plasmodium falciparum (Pfa) pfa1 PFB0245c
Rattus norvegicus (Rno) rno13892 ENSRNOP00000021738
(RGD:1308565)
Saccharomyces cerevisiae (Sce) sce3404 YJL140W
(S000003676)
Schizosaccharomyces pombe (Spo) spo298 SPBC337.14 O74825
Yarrowia lipolytica (Yli) yli2245 YALI0C12793g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005575 cellular_component C
ND
PfaPFB0245c
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
IC
HsaO15514
ISS
DdiDDB0216294
RnoRGD:1308565
TAS
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0005739 mitochondrion C
IDA
SpoSPBC337.14
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
TAS
SpoSPBC337.14
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPBC337.14
ISS
DdiDDB0216294
RnoRGD:1308565
TAS
HsaO15514
SceS000003676
GO:0005515 protein binding F
IGI
SpoSPBC337.14
GO:0000288 mRNA catabolism, deadenylation-dependent
decay
P
IMP
SceS000003676
GO:0000723 telomere maintenance P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter
P
ISS
DdiDDB0216294
PfaPFB0245c
RnoRGD:1308565
TAS
HsaO15514
SceS000003676
SpoSPBC337.14
GO:0006406 mRNA export from nucleus P
IMP
SceS000003676
GO:0006950 response to stress P
ISS
DdiDDB0216294
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00018391

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC337.14
(O74825)
YJL140W
(S000003676)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000932 cytoplasmic mRNA processing body C
IDA
SceS000003676
GO:0005634 nucleus C
IDA
SceS000003676
SpoSPBC337.14
GO:0005665 DNA-directed RNA polymerase II, core
complex
C
TAS
SceS000003676
GO:0005737 cytoplasm C
IDA
SceS000003676
GO:0005739 mitochondrion C
IDA
SpoSPBC337.14
GO:0016591 DNA-directed RNA polymerase II,
holoenzyme
C
TAS
SpoSPBC337.14
GO:0003899 DNA-directed RNA polymerase activity F
IDA
SpoSPBC337.14
TAS
SceS000003676
GO:0005515 protein binding F
IGI
SpoSPBC337.14
GO:0000288 mRNA catabolism, deadenylation-dependent
decay
P
IMP
SceS000003676
GO:0000723 telomere maintenance P
IMP
SceS000003676
GO:0006366 transcription from RNA polymerase II
promoter
P
TAS
SceS000003676
SpoSPBC337.14
GO:0006406 mRNA export from nucleus P
IMP
SceS000003676

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk