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Search term: YGR158C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name MTR3
SGD link S000003390
Alternative ID YGR158C
Description 3'5' exoribonuclease, exosome subunit; nucleolar protein involved in export of mRNA and ribosomal subunits; homologous to the E. coli exonuclease RNase PH
Synonyms YGR158C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1068 ACDHYPE

KOGs classification KOGs description
J
INFORMATION STORAGE AND PROCESSING
Translation, ribosomal structure and biogenesis
Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g61620 GI:15233167 Q9SP08
Caenorhabditis elegans (Cel) CE20469
(WBGene00007201)
GI:17538326 Q17533
Caenorhabditis elegans (Cel) CE26236_1 GI:17555548
Drosophila melanogaster (Dme) 7293727 GI:7293727 Q9VW53
Drosophila melanogaster (Dme) 7298022 GI:7298022 Q9VK19
Homo sapiens (Hsa) Hs9506689
(EXOSC4)
GI:9506689 Q9NPD3
Homo sapiens (Hsa) Hs20542749 GI:20542749
Homo sapiens (Hsa) Hs17402904
(EXOSC6)
GI:17402904 Q5RKV6
Saccharomyces cerevisiae (Sce) YGR158c
(S000003390)
GI:6321597 P48240
Saccharomyces cerevisiae (Sce) YGR195w
(S000003427)
GI:6321634 P46948
Schizosaccharomyces pombe (Spo) SPAC3G9.10c GI:19114994 O42872
Schizosaccharomyces pombe (Spo) SPBC211.08c GI:19113410 Q9P7R3
Encephalitozoon cuniculi (Ecu) ECU09g0830 GI:19173205


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000003427
S000003390
ISS
SpoSPAC3G9.10c
SPBC211.08c
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000003390
S000003427
ISS
SpoSPAC3G9.10c
SPBC211.08c
GO:0005634 nucleus C
IDA
SpoSPAC3G9.10c
SPBC211.08c
GO:0005730 nucleolus C
NAS
HsaQ9NPD3
GO:0005737 cytoplasm C
NAS
HsaQ9NPD3
GO:0005816 spindle pole body C
IDA
SpoSPAC3G9.10c
GO:0005829 cytosol C
IDA
SpoSPBC211.08c
SPAC3G9.10c
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPAC3G9.10c
SPBC211.08c
NAS
HsaQ9NPD3
TAS
SceS000003390
S000003427
GO:0005515 protein binding F
IPI
HsaQ9NPD3
GO:0006364 rRNA processing P
NAS
HsaQ9NPD3
GO:0006365 35S primary transcript processing P
ISS
SpoSPBC211.08c
SPAC3G9.10c
TAS
SceS000003427
S000003390
GO:0006402 mRNA catabolism P
IMP
SceS000003427
IPI
SceS000003390
ISS
SpoSPBC211.08c
SPAC3G9.10c
TAS
SceS000003427
GO:0008406 gonad development P
IMP
CelWBGene00007201
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00007201
GO:0040007 growth P
IMP
CelWBGene00007201
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00007201
GO:0040018 positive regulation of body size P
IMP
CelWBGene00007201
GO:0040032 post-embryonic body morphogenesis P
IMP
CelWBGene00007201
GO:0043330 response to exogenous dsRNA P
IMP
SceS000003427
ISS
SpoSPAC3G9.10c

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39139

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) MTR3
(S000003390)
GI:6321597 P48240
Kluyveromyces lactis (Kla) KLLA0F18304g GI:50311745 Q6CJI8
Eremothecium gossypii (Ego) AFR109W GI:45198627


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000003390
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000003390
GO:0000175 3'-5'-exoribonuclease activity F
TAS
SceS000003390
GO:0006365 35S primary transcript processing P
TAS
SceS000003390
GO:0006402 mRNA catabolism P
IPI
SceS000003390

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_17617

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago3301 AFR109W
Candida glabrata (Cgl) cgl1082 CAGL0E03223g
Debaryomyces hansenii (Dha) dha596 DEHA0A13343g
Kluyveromyces lactis (Kla) kla4901 KLLA0F18304g
Neurospora crassa (Ncr) ncr7818 NCU08026.2
Saccharomyces cerevisiae (Sce) sce2531 YGR158C
(S000003390)
Yarrowia lipolytica (Yli) yli4116 YALI0E06039g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000003390
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000003390
GO:0000175 3'-5'-exoribonuclease activity F
TAS
SceS000003390
GO:0006365 35S primary transcript processing P
TAS
SceS000003390
GO:0006402 mRNA catabolism P
IPI
SceS000003390

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