YOGY Home YOGY Help

Search term: YGL213C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name SKI8
SGD link S000003181
Alternative ID YGL213C
Description Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs as well as double-strand break formation during meiotic recombination; required for repressing propagation of dsRNA viruses
Synonyms YGL213C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG4155 ACDHYP-

KOGs classification KOGs description
R
POORLY CHARACTERIZED
General function prediction only
FOG: WD40 repeat

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g24130 GI:15221675 O48679
Arabidopsis thaliana (Ath) At1g24530 GI:18395507 Q9FYL1
Arabidopsis thaliana (Ath) At1g47610 GI:15220271 Q9SX94
Arabidopsis thaliana (Ath) At1g49450 GI:15222143 Q9XIB2
Arabidopsis thaliana (Ath) At2g26490 GI:15225317 O48716
Arabidopsis thaliana (Ath) At3g18950 GI:15230244 Q9LJ71
Arabidopsis thaliana (Ath) At3g50390 GI:15229740
Arabidopsis thaliana (Ath) At3g51930 GI:15231088 Q9SV11
Arabidopsis thaliana (Ath) At4g11270 GI:15237124 Q9SUT4
Arabidopsis thaliana (Ath) At4g29830 GI:15233721 Q9SZQ5
Arabidopsis thaliana (Ath) At4g34380 GI:15235354 Q9SZ03
Arabidopsis thaliana (Ath) At5g50120 GI:15240616 Q9FG99
Caenorhabditis elegans (Cel) CE18408 GI:17541736
Caenorhabditis elegans (Cel) CE26171 GI:17556178
Caenorhabditis elegans (Cel) CE27119
(WBGene00008533)
GI:17506519
Drosophila melanogaster (Dme) 7290231 GI:7290231 Q9W543
Drosophila melanogaster (Dme) 7299285 GI:4972734 Q9XZ19
Drosophila melanogaster (Dme) 7300980 GI:7300980 Q9VCN9
Drosophila melanogaster (Dme) 7301704 GI:7301704 Q9VAT2
Drosophila melanogaster (Dme) 7302353 GI:7302353
Drosophila melanogaster (Dme) 7302600 GI:7302600
Homo sapiens (Hsa) Hs13236597 GI:13236597
Homo sapiens (Hsa) Hs13376840
(WDR61)
GI:13376840 Q9GZS3
Homo sapiens (Hsa) Hs16579890 GI:16579890
Homo sapiens (Hsa) Hs16579892 GI:16579892
Homo sapiens (Hsa) Hs18553366_1 GI:18553366
Homo sapiens (Hsa) Hs21536371_2 GI:13649631
Homo sapiens (Hsa) Hs22054346 GI:22054346
Homo sapiens (Hsa) Hs4502123_2 GI:4502123 Q9UJ66
Homo sapiens (Hsa) Hs7108333_2 GI:7108333 Q9UJ66
Homo sapiens (Hsa) HsM6005894_2 GI:6005894
Saccharomyces cerevisiae (Sce) YDR030c
(S000002437)
GI:6320233 Q12021
Saccharomyces cerevisiae (Sce) YGL213c
(S000003181)
GI:6321225 Q02793
Saccharomyces cerevisiae (Sce) YJL112w
(S000003648)
GI:6322349 P47025
Saccharomyces cerevisiae (Sce) YKR036c
(S000001744)
GI:6322889
Saccharomyces cerevisiae (Sce) YNL253w
(S000005197)
GI:6324076 P53851
Schizosaccharomyces pombe (Spo) SPBC32F12.02 GI:19112937 Q09150


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
IDA
SceS000003181
GO:0000346 transcription export complex C
IPI
SceS000005197
GO:0005575 cellular_component C
ND
AthAt3g18950
GO:0005634 nucleus C
IC
SceS000002437
IDA
SpoSPBC32F12.02
GO:0005737 cytoplasm C
IPI
SceS000003181
GO:0005739 mitochondrion C
IDA
SceS000001744
GO:0005741 mitochondrial outer membrane C
IDA
SceS000003648
GO:0005829 cytosol C
IDA
SpoSPBC32F12.02
GO:0005834 heterotrimeric G-protein complex C
RCA
AthAt1g24530
At2g26490
At4g29830
At3g50390
At1g47610
At5g50120
GO:0030014 CCR4-NOT complex C
IPI
SceS000001744
GO:0000166 nucleotide binding F
RCA
AthAt1g24530
At3g18950
At2g26490
At4g29830
At5g50120
At3g51930
At3g50390
At1g47610
GO:0003674 molecular_function F
ND
SceS000005197
S000002437
S000003648
GO:0005515 protein binding F
IPI
SceS000001744
ISS
SceS000001744
GO:0030371 translation repressor activity F
TAS
SceS000003181
GO:0000002 mitochondrial genome maintenance P
IGI
SceS000003648
IMP
SceS000003648
GO:0000266 mitochondrial fission P
IGI
SceS000003648
IMP
SceS000001744
S000003648
IPI
SceS000001744
S000003648
GO:0006281 DNA repair P
IMP
SceS000002437
GO:0006355 regulation of transcription, DNA-dependent P
IGI
SceS000001744
IMP
SceS000001744
IPI
SceS000001744
GO:0006402 mRNA catabolism P
IMP
SceS000003181
TAS
SceS000003181
GO:0006406 mRNA export from nucleus P
IC
SceS000005197
GO:0006461 protein complex assembly P
IMP
SceS000003181
GO:0007131 meiotic recombination P
IMP
SpoSPBC32F12.02
GO:0008150 biological_process P
ND
AthAt3g50390
At3g18950
At2g26490
At1g24530
At5g50120
At1g47610
GO:0042138 meiotic DNA double-strand break
formation
P
IPI
SceS000003181
GO:0043330 response to exogenous dsRNA P
IMP
SceS000003181

Back to the top

Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000003181

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000003181
(YGL213C)
Schizosaccharomyces pombe (Spo) 2599 1 SPBC32F12.02 Q09150


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
IDA
SceS000003181
GO:0005634 nucleus C
IDA
SpoSPBC32F12.02
GO:0005737 cytoplasm C
IPI
SceS000003181
GO:0005829 cytosol C
IDA
SpoSPBC32F12.02
GO:0030371 translation repressor activity F
TAS
SceS000003181
GO:0006402 mRNA catabolism P
IMP
SceS000003181
TAS
SceS000003181
GO:0006461 protein complex assembly P
IMP
SceS000003181
GO:0007131 meiotic recombination P
IMP
SpoSPBC32F12.02
GO:0042138 meiotic DNA double-strand break
formation
P
IPI
SceS000003181
GO:0043330 response to exogenous dsRNA P
IMP
SceS000003181

Back to the top

HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38992

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) SKI8
(S000003181)
GI:6321225 Q02793
Kluyveromyces lactis (Kla) KLLA0A01650g GI:50302277 Q6CYB7
Eremothecium gossypii (Ego) AER439W GI:45191040


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
IDA
SceS000003181
GO:0005737 cytoplasm C
IPI
SceS000003181
GO:0030371 translation repressor activity F
TAS
SceS000003181
GO:0006402 mRNA catabolism P
IMP
SceS000003181
TAS
SceS000003181
GO:0006461 protein complex assembly P
IMP
SceS000003181
GO:0042138 meiotic DNA double-strand break
formation
P
IPI
SceS000003181
GO:0043330 response to exogenous dsRNA P
IMP
SceS000003181

Back to the top

OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_24683

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago2939 AER439W
Candida glabrata (Cgl) cgl2828 CAGL0I07073g
Debaryomyces hansenii (Dha) dha221 DEHA0A04994g
Kluyveromyces lactis (Kla) kla69 KLLA0A01650g
Saccharomyces cerevisiae (Sce) sce2309 YGL213C
(S000003181)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000228 nuclear chromosome C
IDA
SceS000003181
GO:0005737 cytoplasm C
IPI
SceS000003181
GO:0030371 translation repressor activity F
TAS
SceS000003181
GO:0006402 mRNA catabolism P
IMP
SceS000003181
TAS
SceS000003181
GO:0006461 protein complex assembly P
IMP
SceS000003181
GO:0042138 meiotic DNA double-strand break
formation
P
IPI
SceS000003181
GO:0043330 response to exogenous dsRNA P
IMP
SceS000003181

Back to the top

Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC32F12.02
(Q09150)
YGL213C
(S000003181)