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Search term: YGL172W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name NUP49
SGD link S000003140
Alternative ID YGL172W
Description Subunit of the Nsp1p-Nup57p-Nup49p-Nic96p subcomplex of the nuclear pore complex (NPC), required for nuclear export of ribosomes
Synonyms YGL172W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG0845 ACDHYPE

KOGs classification KOGs description
Y
CELLULAR PROCESSES AND SIGNALING
Nuclear structure
U
CELLULAR PROCESSES AND SIGNALING
Intracellular trafficking, secretion, and vesicular transport
Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g10390 GI:15218520
Arabidopsis thaliana (Ath) At1g59660 GI:15218866
Arabidopsis thaliana (Ath) At1g80680 GI:15220199
Arabidopsis thaliana (Ath) At3g10650 GI:15228349 Q9CAF4
Caenorhabditis elegans (Cel) CE10988_1 GI:17507541 O01576
Caenorhabditis elegans (Cel) CE13738
(WBGene00003793)
GI:17509085 P91457
Caenorhabditis elegans (Cel) CE20315
(WBGene00003790)
GI:17510275 Q9XWK3
Caenorhabditis elegans (Cel) CE28183 GI:17556885
Caenorhabditis elegans (Cel) CE28184 GI:17556883
Drosophila melanogaster (Dme) 7300534 GI:7300534 Q9VDV3
Drosophila melanogaster (Dme) 7301053 GI:7301053
Drosophila melanogaster (Dme) 7301054 GI:7301054
Homo sapiens (Hsa) Hs15147335
(NCOA5)
GI:15147335 Q9HCD5
Homo sapiens (Hsa) Hs21264365
(NUP98)
GI:21264365 Q9Y6J4
Homo sapiens (Hsa) Hs21264367 GI:21264367
Homo sapiens (Hsa) Hs21264369 GI:1709400
Homo sapiens (Hsa) Hs21264371 GI:21264371
Homo sapiens (Hsa) HsM11120678 GI:11120678
Saccharomyces cerevisiae (Sce) YDR192c
(S000002600)
GI:6320399 P49686
Saccharomyces cerevisiae (Sce) YGL092w
(S000003060)
GI:6321346 P49687
Saccharomyces cerevisiae (Sce) YGL172w
(S000003140)
GI:6321266 Q02199
Saccharomyces cerevisiae (Sce) YKL068w
(S000001551)
GI:6322782 Q02629
Saccharomyces cerevisiae (Sce) YMR047c
(S000004650)
GI:6323691 Q02630
Schizosaccharomyces pombe (Spo) SPAC1486.05 GI:19115005 Q9UTK4
Schizosaccharomyces pombe (Spo) SPAC22G7.09c GI:19113970 Q09793
Encephalitozoon cuniculi (Ecu) ECU02g0460 GI:19073967 Q8SWE7
Encephalitozoon cuniculi (Ecu) ECU11g1820 GI:19074982 Q8SQR9


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005575 cellular_component C
ND
AthAt3g10650
GO:0005634 nucleus C
IDA
SpoSPAC22G7.09c
GO:0005635 nuclear envelope C
IDA
SceS000003140
GO:0005643 nuclear pore C
IDA
SceS000003060
S000002600
S000001551
S000003140
S000004650
TAS
SpoSPAC1486.05
SPAC22G7.09c
GO:0005737 cytoplasm C
IDA
SpoSPAC22G7.09c
GO:0031080 Nup107-160 complex C
IDA
SpoSPAC1486.05
GO:0031965 nuclear membrane C
IDA
SpoSPAC22G7.09c
SPAC1486.05
GO:0003674 molecular_function F
ND
AthAt3g10650
GO:0005198 structural molecule activity F
TAS
SceS000003060
S000002600
S000001551
S000003140
S000004650
GO:0005215 transporter activity F
RCA
AthAt1g10390
At1g59660
GO:0005515 protein binding F
IPI
SpoSPAC1486.05
GO:0000055 ribosomal large subunit export from
nucleus
P
IMP
SceS000003140
GO:0000917 barrier septum formation P
IMP
SpoSPAC1486.05
SPAC22G7.09c
GO:0006388 tRNA splicing P
IMP
SceS000003060
S000003140
S000004650
GO:0006406 mRNA export from nucleus P
IMP
SceS000003060
S000004650
S000003140
TAS
SceS000002600
S000001551
GO:0006407 rRNA export from nucleus P
TAS
SceS000002600
S000003060
S000003140
S000004650
S000001551
GO:0006408 snRNA export from nucleus P
TAS
SceS000002600
S000003060
S000004650
S000003140
S000001551
GO:0006409 tRNA export from nucleus P
IMP
SceS000004650
TAS
SceS000003060
S000002600
S000003140
S000001551
GO:0006606 protein import into nucleus P
IMP
SceS000003060
S000003140
S000004650
GO:0006607 NLS-bearing substrate import into
nucleus
P
TAS
SceS000002600
S000003060
S000003140
S000001551
S000004650
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002600
S000003060
S000003140
S000001551
S000004650
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus
P
TAS
SceS000003060
S000002600
S000003140
S000001551
S000004650
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000003060
S000002600
S000003140
S000001551
S000004650
GO:0006611 protein export from nucleus P
TAS
SceS000002600
S000003060
S000003140
S000001551
S000004650
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPAC22G7.09c
SPAC1486.05
GO:0006997 nuclear organization and biogenesis P
IMP
SpoSPAC1486.05
GO:0006999 nuclear pore organization and biogenesis P
IMP
SceS000003060
TAS
SceS000002600
S000003140
S000001551
S000004650
GO:0007276 gametogenesis P
IMP
CelWBGene00003797
WBGene00003790
GO:0008150 biological_process P
ND
AthAt3g10650
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00003797
WBGene00003793
WBGene00003790
GO:0009910 negative regulation of flower development P
NAS
AthAt1g80680
GO:0018985 pronuclear envelope synthesis P
IMP
CelWBGene00003797
WBGene00003793
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003797
WBGene00003790
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003797
WBGene00003790
GO:0050000 chromosome localization P
IMP
SceS000003060

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000003140

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000003140
(YGL172W)
Canis familiaris (Cfa) 2083 1 ENSCAFP00000012616
Saccharomyces cerevisiae (Sce) 2083 1 S000003351
(YGR119C)
Gallus gallus (Gga) 1684 1 ENSGALP00000022050
(LOC426182)
Homo sapiens (Hsa) 1989 1 ENSP00000264883
(NUP54)
Q53H29
Saccharomyces cerevisiae (Sce) 1989 1 S000003351
(YGR119C)
Mus musculus (EMM) 1955 1 ENSMUSP00000046540
(MGI:1920460)
Q8BTS4
Saccharomyces cerevisiae (Sce) 1955 1 S000003351
(YGR119C)
Pan troglodytes (Ptr) 1753 1 ENSPTRP00000018567
Saccharomyces cerevisiae (Sce) 1753 1 S000003351
(YGR119C)
Rattus norvegicus (ERN) 1903 1 ENSRNOP00000003070
(RGD:619926)
P70582
Saccharomyces cerevisiae (Sce) 1903 1 S000003351
(YGR119C)
Saccharomyces cerevisiae (Sce) 1765 1 S000003351
(YGR119C)
Caenorhabditis elegans (Cel) 1551 1 WBGene00003790
(CE20315)
Saccharomyces cerevisiae (Sce) 1544 1 S000003351
(YGR119C)
Mus musculus (Mmu) 1917 1 MGI:1920460 Q8BTS4
Saccharomyces cerevisiae (Sce) 1917 1 S000003351
(YGR119C)
Rattus norvegicus (Rno) 1651 1 RGD:619926
Saccharomyces cerevisiae (Sce) 1651 1 S000003351
(YGR119C)
Schizosaccharomyces pombe (Spo) 1908 1 SPAC22G7.09c Q09793
Arabidopsis thaliana (Ath) 1958 1 NP_173841
(At1g24310.1)
Q8GYF7
Saccharomyces cerevisiae (Sce) 1958 1 S000003351
(YGR119C)


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SpoSPAC22G7.09c
GO:0005635 nuclear envelope C
IDA
SceS000003140
GO:0005643 nuclear pore C
IDA
RnoRGD:619926
SceS000003351
S000003140
TAS
RnoRGD:619926
SpoSPAC22G7.09c
GO:0005737 cytoplasm C
IDA
SpoSPAC22G7.09c
GO:0031965 nuclear membrane C
IDA
SpoSPAC22G7.09c
GO:0005198 structural molecule activity F
TAS
SceS000003351
S000003140
GO:0005487 nucleocytoplasmic transporter activity F
IDA
RnoRGD:619926
GO:0005515 protein binding F
IPI
RnoRGD:619926
GO:0000055 ribosomal large subunit export from
nucleus
P
IMP
SceS000003140
GO:0000917 barrier septum formation P
IMP
SpoSPAC22G7.09c
GO:0006388 tRNA splicing P
IMP
SceS000003140
GO:0006406 mRNA export from nucleus P
IMP
SceS000003351
S000003140
GO:0006407 rRNA export from nucleus P
TAS
SceS000003351
S000003140
GO:0006408 snRNA export from nucleus P
TAS
SceS000003351
S000003140
GO:0006409 tRNA export from nucleus P
TAS
SceS000003351
S000003140
GO:0006605 protein targeting P
IDA
RnoRGD:619926
GO:0006606 protein import into nucleus P
IMP
SceS000003351
S000003140
GO:0006607 NLS-bearing substrate import into
nucleus
P
TAS
SceS000003140
S000003351
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000003140
S000003351
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus
P
TAS
SceS000003140
S000003351
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000003351
S000003140
GO:0006611 protein export from nucleus P
TAS
SceS000003140
S000003351
GO:0006913 nucleocytoplasmic transport P
IDA
RnoRGD:619926
TAS
SpoSPAC22G7.09c
GO:0006999 nuclear pore organization and biogenesis P
TAS
SceS000003140
S000003351
GO:0007276 gametogenesis P
IMP
CelWBGene00003790
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00003790
GO:0040010 positive regulation of growth rate P
IMP
CelWBGene00003790
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00003790

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
39007

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC22G7.09c GI:19113970 Q09793
Saccharomyces cerevisiae (Sce) NUP49
(S000003140)
GI:6321266 Q02199
Kluyveromyces lactis (Kla) KLLA0F22363g GI:50312095 Q6CJ10
Magnaporthe grisea (Mgr) MG10698.4 GI:39971355
Neurospora crassa (Ncr) GeneID:2710194 GI:32415766