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Search term: YDR195W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name REF2
SGD link S000002603
Alternative ID YDR195W
Description RNA-binding protein involved in the cleavage step of mRNA 3'-end formation prior to polyadenylation, and in snoRNA maturation; part of holo-CPF subcomplex APT, which associates with 3'-ends of snoRNA- and mRNA-encoding genes
Synonyms YDR195W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000002603

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000002603
(YDR195W)
Takifugu rubripes (Fru) 1975 1 SINFRUP00000169301
Takifugu rubripes (Fru) 1975 0.155 SINFRUP00000131263


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002603
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex
C
IPI
SceS000002603
GO:0003677 DNA binding F
IPI
SceS000002603
GO:0003723 RNA binding F
IDA
SceS000002603
GO:0000723 telomere maintenance P
IMP
SceS000002603
GO:0006397 mRNA processing P
IGI
SceS000002603
IMP
SceS000002603
IPI
SceS000002603
GO:0030846 transcription termination from Pol II promoter,
RNA polymerase(A) coupled
P
IPI
SceS000002603
GO:0030847 transcription termination from Pol II promoter,
RNA polymerase(A)-independent
P
IMP
SceS000002603
IPI
SceS000002603
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000002603

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38718

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) REF2
(S000002603)
GI:6320401 P42073
Kluyveromyces lactis (Kla) KLLA0D18689g GI:50307791 Q6CQA0
Eremothecium gossypii (Ego) AGL111W GI:45200986


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002603
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex
C
IPI
SceS000002603
GO:0003677 DNA binding F
IPI
SceS000002603
GO:0003723 RNA binding F
IDA
SceS000002603
GO:0000723 telomere maintenance P
IMP
SceS000002603
GO:0006397 mRNA processing P
IGI
SceS000002603
IMP
SceS000002603
IPI
SceS000002603
GO:0030846 transcription termination from Pol II promoter,
RNA polymerase(A) coupled
P
IPI
SceS000002603
GO:0030847 transcription termination from Pol II promoter,
RNA polymerase(A)-independent
P
IMP
SceS000002603
IPI
SceS000002603
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000002603

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_31466

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago4201 AGL111W
Candida glabrata (Cgl) cgl1989 CAGL0G08382g
Kluyveromyces lactis (Kla) kla2888 KLLA0D18689g
Saccharomyces cerevisiae (Sce) sce1239 YDR195W
(S000002603)


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000002603
GO:0005847 mRNA cleavage and polyadenylation specificity
factor complex
C
IPI
SceS000002603
GO:0003677 DNA binding F
IPI
SceS000002603
GO:0003723 RNA binding F
IDA
SceS000002603
GO:0000723 telomere maintenance P
IMP
SceS000002603
GO:0006397 mRNA processing P
IGI
SceS000002603
IMP
SceS000002603
IPI
SceS000002603
GO:0030846 transcription termination from Pol II promoter,
RNA polymerase(A) coupled
P
IPI
SceS000002603
GO:0030847 transcription termination from Pol II promoter,
RNA polymerase(A)-independent
P
IMP
SceS000002603
IPI
SceS000002603
GO:0031126 snoRNA 3'-end processing P
IMP
SceS000002603

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