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Search term: YDL111C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name RRP42
SGD link S000002269
Alternative ID YDL111C
Description Protein involved in rRNA processing; component of the exosome 3->5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p
Synonyms YDL111C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG1612 ACDHYP-

KOGs classification KOGs description
J
INFORMATION STORAGE AND PROCESSING
Translation, ribosomal structure and biogenesis
Exosomal 3'-5' exoribonuclease complex, subunit Rrp42

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At3g07750 GI:6648187
Caenorhabditis elegans (Cel) CE15927 GI:17560372
Drosophila melanogaster (Dme) 7303006 GI:7303006
Homo sapiens (Hsa) Hs18545020 GI:18545020
Saccharomyces cerevisiae (Sce) YDL111c
(S000002269)
GI:6320092 Q12277
Schizosaccharomyces pombe (Spo) SPBC16G5.10 GI:19113551 O60124


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005575 cellular_component C
ND
AthAt3g07750
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
RCA
AthAt3g07750
TAS
SceS000002269
GO:0003723 RNA binding F
RCA
AthAt3g07750
GO:0006365 35S primary transcript processing P
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006396 RNA processing P
RCA
AthAt3g07750
GO:0006402 mRNA catabolism P
IPI
SceS000002269
ISS
SpoSPBC16G5.10

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000002269

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000002269
(YDL111C)
Schizosaccharomyces pombe (Spo) 2675 1 SPBC16G5.10 O60124
Plasmodium falciparum (Pfa) 1066 1 MAL13P1.204


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006365 35S primary transcript processing P
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006402 mRNA catabolism P
IPI
SceS000002269
ISS
SpoSPBC16G5.10
GO:0008033 tRNA processing P
ISS
PfaMAL13P1.204

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38594

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) RRP42
(S000002269)
GI:6320092 Q12277
Kluyveromyces lactis (Kla) KLLA0E09185g GI:50308723 Q6CNX4
Eremothecium gossypii (Ego) ADL295W GI:45187578


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
GO:0000175 3'-5'-exoribonuclease activity F
TAS
SceS000002269
GO:0006365 35S primary transcript processing P
TAS
SceS000002269
GO:0006402 mRNA catabolism P
IPI
SceS000002269

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13292

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago1446 ADL295W
Candida glabrata (Cgl) cgl2516 CAGL0H10384g
Cryptococcus neoformans (Cne) cne1154 180.m00082
Debaryomyces hansenii (Dha) dha6510 DEHA0G18139g
Kluyveromyces lactis (Kla) kla3364 KLLA0E09185g
Neurospora crassa (Ncr) ncr1758 NCU01806.2
Saccharomyces cerevisiae (Sce) sce883 YDL111C
(S000002269)
Schizosaccharomyces pombe (Spo) spo1024 SPBC16G5.10 O60124
Yarrowia lipolytica (Yli) yli3164 YALI0D11000g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006365 35S primary transcript processing P
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006402 mRNA catabolism P
IPI
SceS000002269
ISS
SpoSPBC16G5.10

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPBC16G5.10
(O60124)
YDL111C
(S000002269)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0000176 nuclear exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0000177 cytoplasmic exosome (RNase complex) C
IDA
SceS000002269
ISS
SpoSPBC16G5.10
GO:0005634 nucleus C
IDA
SpoSPBC16G5.10
GO:0005829 cytosol C
IDA
SpoSPBC16G5.10
GO:0000175 3'-5'-exoribonuclease activity F
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006365 35S primary transcript processing P
ISS
SpoSPBC16G5.10
TAS
SceS000002269
GO:0006402 mRNA catabolism P
IPI
SceS000002269
ISS
SpoSPBC16G5.10

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GO info in one table:

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