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Search term: YDL088C


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name ASM4
SGD link S000002246
Alternative ID YDL088C
Description Nuclear pore complex subunit, part of a subcomplex also containing Nup53p, Nup170p, and Pse1p
Synonyms YDL088C
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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GO info in one table:


HomoloGene results:

HomoloGene cluster Phylogenetic pattern
38603

Species Gene ID NCBI link UniProt link
Saccharomyces cerevisiae (Sce) ASM4
(S000002246)
GI:6320115 Q05166
Kluyveromyces lactis (Kla) KLLA0F07227g GI:50310771 Q6CKY1
Eremothecium gossypii (Ego) ADR272W GI:45188145


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005643 nuclear pore C
IDA
SceS000002246
GO:0005198 structural molecule activity F
TAS
SceS000002246
GO:0000059 protein import into nucleus, docking P
IPI
SceS000002246
GO:0006406 mRNA export from nucleus P
IMP
SceS000002246
GO:0006407 rRNA export from nucleus P
TAS
SceS000002246
GO:0006408 snRNA export from nucleus P
TAS
SceS000002246
GO:0006607 NLS-bearing substrate import into
nucleus
P
TAS
SceS000002246
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002246
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus
P
TAS
SceS000002246
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002246
GO:0006611 protein export from nucleus P
TAS
SceS000002246
GO:0006999 nuclear pore organization and biogenesis P
TAS
SceS000002246

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_13268

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Ashbya gossypii (Ago) ago2013 ADR272W
Candida glabrata (Cgl) cgl4388 CAGL0L07062g
Candida glabrata (Cgl) cgl5079 CAGL0M09691g
Debaryomyces hansenii (Dha) dha6509 DEHA0G18117g
Kluyveromyces lactis (Kla) kla4408 KLLA0F07227g
Saccharomyces cerevisiae (Sce) sce860 YDL088C
(S000002246)
Saccharomyces cerevisiae (Sce) sce4913 YMR153W
(S000004762)
Schizosaccharomyces pombe (Spo) spo4310 SPAC19E9.01c O13838
Yarrowia lipolytica (Yli) yli3081 YALI0D08954g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005635 nuclear envelope C
IDA
SpoSPAC19E9.01c
GO:0005643 nuclear pore C
IDA
SceS000002246
S000004762
TAS
SpoSPAC19E9.01c
GO:0005816 spindle pole body C
NAS
SpoSPAC19E9.01c
GO:0031965 nuclear membrane C
IDA
SpoSPAC19E9.01c
GO:0005198 structural molecule activity F
TAS
SceS000002246
S000004762
GO:0005515 protein binding F
IPI
SpoSPAC19E9.01c
GO:0000059 protein import into nucleus, docking P
IPI
SceS000002246
S000004762
GO:0006406 mRNA export from nucleus P
IMP
SceS000002246
TAS
SceS000004762
GO:0006407 rRNA export from nucleus P
TAS
SceS000002246
S000004762
GO:0006408 snRNA export from nucleus P
TAS
SceS000002246
S000004762
GO:0006409 tRNA export from nucleus P
TAS
SceS000004762
GO:0006607 NLS-bearing substrate import into
nucleus
P
TAS
SceS000002246
S000004762
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002246
S000004762
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus
P
TAS
SceS000002246
S000004762
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002246
S000004762
GO:0006611 protein export from nucleus P
TAS
SceS000002246
S000004762
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPAC19E9.01c
GO:0006999 nuclear pore organization and biogenesis P
TAS
SceS000002246
S000004762
GO:0007094 mitotic spindle checkpoint P
IMP
SpoSPAC19E9.01c

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC19E9.01c
(O13838)
YDL088C
(S000002246)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005635 nuclear envelope C
IDA
SpoSPAC19E9.01c
GO:0005643 nuclear pore C
IDA
SceS000002246
TAS
SpoSPAC19E9.01c
GO:0005816 spindle pole body C
NAS
SpoSPAC19E9.01c
GO:0031965 nuclear membrane C
IDA
SpoSPAC19E9.01c
GO:0005198 structural molecule activity F
TAS
SceS000002246
GO:0005515 protein binding F
IPI
SpoSPAC19E9.01c
GO:0000059 protein import into nucleus, docking P
IPI
SceS000002246
GO:0006406 mRNA export from nucleus P
IMP
SceS000002246
GO:0006407 rRNA export from nucleus P
TAS
SceS000002246
GO:0006408 snRNA export from nucleus P
TAS
SceS000002246
GO:0006607 NLS-bearing substrate import into
nucleus
P
TAS
SceS000002246
GO:0006608 snRNP protein import into nucleus P
TAS
SceS000002246
GO:0006609 mRNA-binding (hnRNP) protein import into
nucleus
P
TAS
SceS000002246
GO:0006610 ribosomal protein import into nucleus P
TAS
SceS000002246
GO:0006611 protein export from nucleus P
TAS
SceS000002246
GO:0006913 nucleocytoplasmic transport P
TAS
SpoSPAC19E9.01c
GO:0006999 nuclear pore organization and biogenesis P
TAS
SceS000002246
GO:0007094 mitotic spindle checkpoint P
IMP
SpoSPAC19E9.01c

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