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Search term: YBR279W


Gene summary:

Species Saccharomyces cerevisiae (Sce)
Primary name PAF1
SGD link S000000483
Alternative ID YBR279W
Description RNA polymerase II-associated protein, defines a large complex that is biochemically and functionally distinct from the Srb-Mediator form of Pol II holoenzyme and is required for full expression of a subset of cell cycle-regulated genes
Synonyms YBR279W
Datasets
KOGs
Inparanoid
HomoloGene
OrthoMCL
Curated

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Query species:

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Search for GO info:  

GO info in one table:


KOG results:

KOG name Phylogenetic pattern
(and link to KOGs with this pattern)
KOG2478 ACDHYP-

KOGs classification KOGs description
K
INFORMATION STORAGE AND PROCESSING
Transcription
Putative RNA polymerase II regulator

Species KOG link NCBI link UniProt link
Arabidopsis thaliana (Ath) At1g79730 GI:15219978
Caenorhabditis elegans (Cel) CE20614
(WBGene00008338)
GI:17559000 P90783
Drosophila melanogaster (Dme) 7296009 GI:7296009 Q9VQ73
Drosophila melanogaster (Dme) 7296819 GI:7296819 Q9VN55
Homo sapiens (Hsa) Hs9506583 GI:9506583
Homo sapiens (Hsa) Hs20545379 GI:20545379
Saccharomyces cerevisiae (Sce) YBR279w
(S000000483)
GI:6319756 P38351
Schizosaccharomyces pombe (Spo) SPAC664.03 GI:19114363 Q9US06


GO terms for KOG results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000483
SpoSPAC664.03
GO:0005829 cytosol C
IDA
SpoSPAC664.03
GO:0008023 transcription elongation factor
complex
C
IPI
SceS000000483
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000000483
ISS
SpoSPAC664.03
TAS
SceS000000483
GO:0003674 molecular_function F
ND
AthAt1g79730
GO:0016944 RNA polymerase II transcription elongation factor
activity
F
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0000723 telomere maintenance P
IMP
SceS000000483
GO:0006310 DNA recombination P
IMP
SceS000000483
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0007582 physiological process P
IMP
CelWBGene00008338
GO:0007626 locomotory behavior P
IMP
CelWBGene00008338
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00008338
GO:0009910 negative regulation of flower development P
IMP
AthAt1g79730
GO:0016571 histone methylation P
IMP
AthAt1g79730
SceS000000483
ISS
SpoSPAC664.03
GO:0040007 growth P
IMP
CelWBGene00008338
GO:0040032 post-embryonic body morphogenesis P
IMP
CelWBGene00008338
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008338

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Inparanoid results:

Selected databases only

Inparanoid query cluster Phylogenetic pattern
S000000483

Species Link to cluster Score Model organism
protein page
UniProt link
Saccharomyces cerevisiae (Sce) query - S000000483
(YBR279W)
Canis familiaris (Cfa) 1917 1 ENSCAFP00000008305
Takifugu rubripes (Fru) 1790 1 SINFRUP00000162918
Homo sapiens (Hsa) 1848 1 ENSP00000221265
(PAF1)
Q9H166
Mus musculus (EMM) 1842 1 ENSMUSP00000003529
(MGI:1923988)
Q8K2T8
Rattus norvegicus (ERN) 1780 1 ENSRNOP00000026778
(RGD:1306219)
Q4V886
Caenorhabditis elegans (Cel) 1624 1 WBGene00008338
(CE20614)
Drosophila melanogaster (Dme) 1826 1 CG2503-PA
(FBgn0010750)
Mus musculus (Mmu) 1778 1 MGI:1923988 Q3UY97
Oryza sativa (Osa) 1768 1 Q6ZD92 Q6ZD92
Schizosaccharomyces pombe (Spo) 2235 1 SPAC664.03 Q9US06
Arabidopsis thaliana (Ath) 1970 1 NP_178091
(At1g79730.1)


GO terms for Inparanoid results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000483
SpoSPAC664.03
GO:0005829 cytosol C
IDA
SpoSPAC664.03
GO:0008023 transcription elongation factor
complex
C
IPI
SceS000000483
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000000483
ISS
SpoSPAC664.03
TAS
SceS000000483
GO:0003674 molecular_function F
ND
AthAt1g79730
GO:0016944 RNA polymerase II transcription elongation factor
activity
F
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0019894 kinesin binding F
IDA
DmeFBgn0010750
GO:0000723 telomere maintenance P
IMP
SceS000000483
GO:0006310 DNA recombination P
IMP
SceS000000483
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0007582 physiological process P
IMP
CelWBGene00008338
GO:0007626 locomotory behavior P
IMP
CelWBGene00008338
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00008338
GO:0009910 negative regulation of flower development P
IMP
AthAt1g79730
GO:0016571 histone methylation P
IMP
AthAt1g79730
SceS000000483
ISS
SpoSPAC664.03
GO:0040007 growth P
IMP
CelWBGene00008338
GO:0040032 post-embryonic body morphogenesis P
IMP
CelWBGene00008338
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008338

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HomoloGene results:

HomoloGene cluster Phylogenetic pattern
29641

Species Gene ID NCBI link UniProt link
Schizosaccharomyces pombe (Spo) SPAC664.03 GI:19114363 Q9US06
Saccharomyces cerevisiae (Sce) PAF1
(S000000483)
GI:6319756 P38351
Kluyveromyces lactis (Kla) KLLA0F01925g GI:50310295 Q6CLM2
Eremothecium gossypii (Ego) AEL157W GI:45190450
Magnaporthe grisea (Mgr) MG06274.4 GI:39976743
Neurospora crassa (Ncr) GeneID:2708182 GI:32411641


GO terms for Homologene results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000483
SpoSPAC664.03
GO:0005829 cytosol C
IDA
SpoSPAC664.03
GO:0008023 transcription elongation factor
complex
C
IPI
SceS000000483
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000000483
ISS
SpoSPAC664.03
TAS
SceS000000483
GO:0016944 RNA polymerase II transcription elongation factor
activity
F
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0000723 telomere maintenance P
IMP
SceS000000483
GO:0006310 DNA recombination P
IMP
SceS000000483
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0016571 histone methylation P
IMP
SceS000000483
ISS
SpoSPAC664.03

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OrthoMCL results:

Selected databases only

OrthoMCL cluster Phylogenetic pattern
OG1_3994

Species OrthoMCL
sequence
Model organism
protein page
UniProt link
Anopheles gambiae (Aga) aga3379 ENSANGP00000020325
Ashbya gossypii (Ago) ago262 AAR076C
Ashbya gossypii (Ago) ago2349 AEL157W
Arabidopsis thaliana (Ath) ath7344 At1g79730.1
Caenorhabditis elegans (Cel) cel4809 C55A6.9
(CE20614;
WBGene00008338)
Candida glabrata (Cgl) cgl350 CAGL0B03333g
Cryptococcus neoformans (Cne) cne3123 167.m03454
Dictyostelium discoideum (Ddi) ddi1009 DDB0190242
Debaryomyces hansenii (Dha) dha2438 DEHA0D03201g
Drosophila melanogaster (Dme) dme10923 CG2503-PA
(FBgn0010750)
Takifugu rubripes (Fru) fru6454 SINFRUP00000162918
Takifugu rubripes (Fru) fru6455 SINFRUP00000167789
Takifugu rubripes (Fru) fru6456 SINFRUP00000167889
Homo sapiens (Hsa) hsa16358 ENSP00000221265
(PAF1)
Q9H166
Homo sapiens (Hsa) hsa16359 ENSP00000221266 O75239
Kluyveromyces lactis (Kla) kla4166 KLLA0F01925g
Mus musculus (Mmu) mmu23506 ENSMUSP00000003529
(MGI:1923988)
Q8K2T8
Neurospora crassa (Ncr) ncr6265 NCU06446.2
Oryza sativa (Osa) osa76649 7303.m00126
Rattus norvegicus (Rno) rno1408 ENSRNOP00000026778
(RGD:1306219)
Q4V886
Saccharomyces cerevisiae (Sce) sce556 YBR279W
(S000000483)
Schizosaccharomyces pombe (Spo) spo4077 SPAC664.03 Q9US06
Yarrowia lipolytica (Yli) yli4771 YALI0E22022g


GO terms for OrthoMCL results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000483
SpoSPAC664.03
GO:0005829 cytosol C
IDA
SpoSPAC664.03
GO:0008023 transcription elongation factor
complex
C
IPI
SceS000000483
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000000483
ISS
SpoSPAC664.03
TAS
SceS000000483
GO:0003674 molecular_function F
ND
AthAt1g79730
GO:0016944 RNA polymerase II transcription elongation factor
activity
F
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0019894 kinesin binding F
IDA
DmeFBgn0010750
GO:0000723 telomere maintenance P
IMP
SceS000000483
GO:0006310 DNA recombination P
IMP
SceS000000483
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0007582 physiological process P
IMP
CelWBGene00008338
GO:0007626 locomotory behavior P
IMP
CelWBGene00008338
GO:0009792 embryonic development (sensu Metazoa) P
IMP
CelWBGene00008338
GO:0009910 negative regulation of flower development P
IMP
AthAt1g79730
GO:0016571 histone methylation P
IMP
AthAt1g79730
SceS000000483
ISS
SpoSPAC664.03
GO:0040007 growth P
IMP
CelWBGene00008338
GO:0040032 post-embryonic body morphogenesis P
IMP
CelWBGene00008338
GO:0040035 hermaphrodite genitalia development P
IMP
CelWBGene00008338

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Curated yeast ortholog results:

S. pombe
systematic ID
S. cerevisiae
systematic ID
SPAC664.03
(Q9US06)
YBR279W
(S000000483)


GO terms for curated homolog results:

GO ID GO term GO aspect Evidence codes and associations
GO:0005634 nucleus C
IDA
SceS000000483
SpoSPAC664.03
GO:0005829 cytosol C
IDA
SpoSPAC664.03
GO:0008023 transcription elongation factor
complex
C
IPI
SceS000000483
GO:0016593 Cdc73/Paf1 complex C
IPI
SceS000000483
ISS
SpoSPAC664.03
TAS
SceS000000483
GO:0016944 RNA polymerase II transcription elongation factor
activity
F
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0000723 telomere maintenance P
IMP
SceS000000483
GO:0006310 DNA recombination P
IMP
SceS000000483
GO:0006368 RNA elongation from RNA polymerase II
promoter
P
IPI
SceS000000483
ISS
SpoSPAC664.03
GO:0016571 histone methylation P
IMP
SceS000000483
ISS
SpoSPAC664.03

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Search for gene by ID or name:

Query species:

Include wild-cards:   

Search for GO info:  

GO info in one table:

s.khadayate@ucl.ac.uk